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LOC106305730 probable beta-1,4-xylosyltransferase IRX14H [ Brassica oleracea (wild cabbage) ]

Gene ID: 106305730, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106305730
Gene description
probable beta-1,4-xylosyltransferase IRX14H
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106305730 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
2
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C7 NC_027754.1 (23827254..23829031, complement)

Chromosome C7 - NC_027754.1Genomic Context describing neighboring genes Neighboring gene F-box protein SKIP2 Neighboring gene small RNA degrading nuclease 3 Neighboring gene uncharacterized LOC106305731 Neighboring gene tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like Neighboring gene protein IRX15-LIKE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027754.1 Chromosome C7 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable beta-1,4-xylosyltransferase IRX14H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027754.1 Reference BOL Primary Assembly

    Range
    23827254..23829031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013742089.1 → XP_013597543.1  LOW QUALITY PROTEIN: probable beta-1,4-xylosyltransferase IRX14H

    UniProtKB/TrEMBL
    A0A0D3D876
    Conserved Domains (2) summary
    pfam03360
    Location:169 → 410
    Glyco_transf_43; Glycosyltransferase family 43
    pfam05832
    Location:26 → 77
    DUF846; Eukaryotic protein of unknown function (DUF846)
Nucleotide Protein
Heading Accession and Version

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