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LOC106304335 putative pectinesterase/pectinesterase inhibitor 28 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106304335, updated on 11-Sep-2024

Summary

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Gene symbol
LOC106304335
Gene description
putative pectinesterase/pectinesterase inhibitor 28
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106304335 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
2
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C7 NC_027754.1 (36252127..36254991, complement)

Chromosome C7 - NC_027754.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L18-2-like Neighboring gene sarcoplasmic reticulum histidine-rich calcium-binding protein Neighboring gene uncharacterized LOC106303204 Neighboring gene uncharacterized LOC106303205 Neighboring gene uncharacterized LOC106303206

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027754.1 Chromosome C7 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by GO

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pectinesterase/pectinesterase inhibitor 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027754.1 Reference BOL Primary Assembly

    Range
    36252127..36254991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013740743.1 → XP_013596197.1  putative pectinesterase/pectinesterase inhibitor 28 isoform X1

    UniProtKB/TrEMBL
    A0A0D3DCI2, A0A3P6E4R7
    Conserved Domains (4) summary
    PLN02217
    Location:1 → 637
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    cd15798
    Location:60 → 210
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    pfam01095
    Location:251 → 547
    Pectinesterase; Pectinesterase
    pfam12446
    Location:564 → 637
    DUF3682; Protein of unknown function (DUF3682)

  2. XM_013740744.1 → XP_013596198.1  putative pectinesterase/pectinesterase inhibitor 28 isoform X2

    UniProtKB/TrEMBL
    A0A3P6E4R7
    Conserved Domains (4) summary
    PLN02217
    Location:1 → 609
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    cd15798
    Location:60 → 210
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    pfam01095
    Location:251 → 547
    Pectinesterase; Pectinesterase
    pfam12446
    Location:564 → 621
    DUF3682; Protein of unknown function (DUF3682)
Nucleotide Protein
Heading Accession and Version

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