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LOC106303498 cellulose synthase-like protein D4 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106303498, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106303498
Gene description
cellulose synthase-like protein D4
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106303498 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
4
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C7 NC_027754.1 (48332022..48335729, complement)

Chromosome C7 - NC_027754.1Genomic Context describing neighboring genes Neighboring gene protein NLP3 Neighboring gene uncharacterized LOC106306963 Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 1 Neighboring gene aminoacylase-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027754.1 Chromosome C7 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027754.1 Reference BOL Primary Assembly

    Range
    48332022..48335729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013739751.1 → XP_013595205.1  cellulose synthase-like protein D4

    UniProtKB/TrEMBL
    A0A0D3DII5
    Conserved Domains (4) summary
    PLN02248
    Location:1 → 1093
    PLN02248; cellulose synthase-like protein
    pfam14570
    Location:117 → 164
    zf-RING_4; RING/Ubox like zinc-binding domain
    cl00337
    Location:251 → 301
    PT_UbiA; UbiA family of prenyltransferases (PTases)
    cl11394
    Location:556 → 841
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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