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LOC106301898 mannan endo-1,4-beta-mannosidase 2 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106301898, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106301898
Gene description
mannan endo-1,4-beta-mannosidase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106301898 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
5
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C7 NC_027754.1 (178170..180501, complement)

Chromosome C7 - NC_027754.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g20710, mitochondrial Neighboring gene riboflavin synthase Neighboring gene uncharacterized LOC106301958 Neighboring gene 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027754.1 Chromosome C7 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan endo-1,4-beta-mannosidase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027754.1 Reference BOL Primary Assembly

    Range
    178170..180501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013738383.1 → XP_013593837.1  mannan endo-1,4-beta-mannosidase 2

    UniProtKB/TrEMBL
    A0A0D3D264, A0A3P6DTF7
    Conserved Domains (1) summary
    cl23725
    Location:51 → 338
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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