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LOC106300281 putative callose synthase 6 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106300281, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106300281
Gene description
putative callose synthase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106300281 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
42
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C6 NC_027753.1 (22146824..22157174)

Chromosome C6 - NC_027753.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase nepenthesin-2 Neighboring gene tobamovirus multiplication protein 1-like Neighboring gene probable receptor-like protein kinase At2g42960 Neighboring gene rhamnogalacturonate lyase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027753.1 Chromosome C6 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative callose synthase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027753.1 Reference BOL Primary Assembly

    Range
    22146824..22157174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013736390.1 → XP_013591844.1  putative callose synthase 6

    UniProtKB/TrEMBL
    A0A0D3CUQ2
    Conserved Domains (3) summary
    pfam02364
    Location:1041 → 1769
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:56 → 162
    Vta1; Vta1 like
    pfam14288
    Location:332 → 444
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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