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LOC106296620 probable pectate lyase 5 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106296620, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106296620
Gene description
probable pectate lyase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106296620 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C6 NC_027753.1 (31057405..31059265, complement)

Chromosome C6 - NC_027753.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106301063 Neighboring gene F-box/kelch-repeat protein At4g38940-like Neighboring gene ultraviolet-B receptor UVR8-like Neighboring gene uncharacterized LOC106297990

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027753.1 Chromosome C6 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027753.1 Reference BOL Primary Assembly

    Range
    31057405..31059265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013732797.1 → XP_013588251.1  probable pectate lyase 5

    UniProtKB/TrEMBL
    A0A0D3CY06, A0A3P6GVV5
    Conserved Domains (1) summary
    smart00656
    Location:133 → 328
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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