U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106296521 sucrose synthase 6 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106296521, updated on 30-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC106296521
Gene description
sucrose synthase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106296521 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
12
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C6 NC_027753.1 (27889496..27893412)

Chromosome C6 - NC_027753.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 15-like Neighboring gene uncharacterized LOC106300151 Neighboring gene homeobox-leucine zipper protein HDG11-like Neighboring gene uncharacterized LOC106300396

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_027753.1 Chromosome C6 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose synthase 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027753.1 Reference BOL Primary Assembly

    Range
    27889496..27893412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013732667.1 → XP_013588121.1  sucrose synthase 6

    UniProtKB/TrEMBL
    A0A0D3CWW7, A0A3P6GSI4
    Conserved Domains (3) summary
    PLN00142
    Location:4 → 817
    PLN00142; sucrose synthase
    pfam00534
    Location:576 → 754
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:20 → 560
    Sucrose_synth; Sucrose synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases