U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106295846 beta-glucosidase-like SFR2, chloroplastic [ Brassica oleracea (wild cabbage) ]

Gene ID: 106295846, updated on 30-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC106295846
Gene description
beta-glucosidase-like SFR2, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106295846 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
10
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (44400556..44403855, complement)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene rab proteins geranylgeranyltransferase component A 2 Neighboring gene uncharacterized protein At3g06530-like Neighboring gene alkaline/neutral invertase C, mitochondrial Neighboring gene tryptophan--tRNA ligase, cytoplasmic-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-glucosidase-like SFR2, chloroplastic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    44400556..44403855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013731839.1 → XP_013587293.1  beta-glucosidase-like SFR2, chloroplastic

    UniProtKB/TrEMBL
    A0A0D3CMB0, A0A3P6FHF4
    Conserved Domains (1) summary
    COG2723
    Location:152 → 514
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases