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LOC106295255 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Brassica oleracea (wild cabbage) ]

Gene ID: 106295255, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106295255
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106295255 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
18
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (42208718..42214267, complement)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 8 Neighboring gene uncharacterized LOC106295301 Neighboring gene casparian strip membrane protein 2 Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene 40S ribosomal protein S14-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    42208718..42214267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013731109.1 → XP_013586563.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    UniProtKB/TrEMBL
    A0A0D3CL54, A0A3P6AHN3, A0A3P6FHZ8
    Conserved Domains (3) summary
    COG3914
    Location:312 → 844
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:47 → 429
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:329 → 357
    TPR; TPR repeat [structural motif]

  2. XM_013731108.1 → XP_013586562.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    UniProtKB/TrEMBL
    A0A0D3CL54, A0A3P6AHN3, A0A3P6FHZ8
    Conserved Domains (3) summary
    COG3914
    Location:312 → 844
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:47 → 429
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:329 → 357
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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