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LOC106295207 starch synthase 2, chloroplastic/amyloplastic-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106295207, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106295207
Gene description
starch synthase 2, chloroplastic/amyloplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106295207 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
8
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (46835255..46838757)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene pyruvate, phosphate dikinase regulatory protein 2-like Neighboring gene peroxidase 27-like Neighboring gene uncharacterized protein At5g19025 Neighboring gene pre-rRNA-processing protein ESF1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase 2, chloroplastic/amyloplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    46835255..46838757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013731046.1 → XP_013586500.1  starch synthase 2, chloroplastic/amyloplastic-like

    UniProtKB/TrEMBL
    A0A0D3CNG3, A0A3P6FEE4
    Conserved Domains (3) summary
    TIGR02095
    Location:293 → 780
    glgA; glycogen/starch synthase, ADP-glucose type
    pfam06075
    Location:10 → 196
    DUF936; Plant protein of unknown function (DUF936)
    cl25756
    Location:116 → 286
    BASP1; Brain acid soluble protein 1 (BASP1 protein)
Nucleotide Protein
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