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LOC106295022 putative callose synthase 8 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106295022, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106295022
Gene description
putative callose synthase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106295022 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
40
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (40048193..40058397, complement)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene C2 domain-containing protein At1g53590 Neighboring gene pentatricopeptide repeat-containing protein At3g14580, mitochondrial Neighboring gene uncharacterized LOC106293125 Neighboring gene geranylgeranyl pyrophosphate synthase 9, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative callose synthase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    40048193..40058397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013730781.1 → XP_013586235.1  putative callose synthase 8

    UniProtKB/TrEMBL
    A0A3P6ENK7
    Conserved Domains (3) summary
    pfam02364
    Location:1107 → 1835
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:68 → 118
    Vta1; Vta1 like
    pfam14288
    Location:338 → 451
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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