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LOC106294699 probable beta-1,3-galactosyltransferase 1 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106294699, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106294699
Gene description
probable beta-1,3-galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106294699 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (4794424..4797881)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106292590 Neighboring gene pentatricopeptide repeat-containing protein At1g11710, mitochondrial Neighboring gene starch synthase 3, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC106293907 Neighboring gene uncharacterized LOC106344316

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    4794424..4797881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013730323.1 → XP_013585777.1  probable beta-1,3-galactosyltransferase 1 isoform X1

    Conserved Domains (3) summary
    PLN03193
    Location:1 → 391
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:23 → 103
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:136 → 334
    Galactosyl_T; Galactosyltransferase

  2. XM_013730324.1 → XP_013585778.1  probable beta-1,3-galactosyltransferase 1 isoform X2

    Conserved Domains (3) summary
    PLN03193
    Location:1 → 390
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:23 → 102
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:135 → 333
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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