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LOC106294697 starch synthase 3, chloroplastic/amyloplastic [ Brassica oleracea (wild cabbage) ]

Gene ID: 106294697, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106294697
Gene description
starch synthase 3, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106294697 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
16
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (4789535..4794611)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106292590 Neighboring gene pentatricopeptide repeat-containing protein At1g11710, mitochondrial Neighboring gene probable beta-1,3-galactosyltransferase 1 Neighboring gene uncharacterized LOC106293907 Neighboring gene uncharacterized LOC106344316

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    4789535..4794611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013730320.1 → XP_013585774.1  starch synthase 3, chloroplastic/amyloplastic isoform X1

    Conserved Domains (3) summary
    cd03791
    Location:638 → 1082
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    PLN02316
    Location:74 → 1085
    PLN02316; synthase/transferase
    pfam16760
    Location:541 → 630
    CBM53; Starch/carbohydrate-binding module (family 53)

  2. XM_013730321.1 → XP_013585775.1  starch synthase 3, chloroplastic/amyloplastic isoform X2

    Conserved Domains (3) summary
    cd03791
    Location:565 → 1009
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    PLN02316
    Location:1 → 1012
    PLN02316; synthase/transferase
    pfam16760
    Location:468 → 557
    CBM53; Starch/carbohydrate-binding module (family 53)
Nucleotide Protein
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