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LOC106294434 exopolygalacturonase clone GBGA483-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106294434, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106294434
Gene description
exopolygalacturonase clone GBGA483-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106294434 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
4
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (43681664..43683965)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene growth hormone-regulated TBC protein 1-A Neighboring gene rho GDP-dissociation inhibitor 1-like Neighboring gene glutathione S-transferase T3-like Neighboring gene exopolygalacturonase clone GBGA483-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase clone GBGA483-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    43681664..43683965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013729987.1 → XP_013585441.1  exopolygalacturonase clone GBGA483-like

    UniProtKB/TrEMBL
    A0A0D3CLX9, A0A3P6FN60
    Conserved Domains (2) summary
    pfam00295
    Location:160 → 488
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:123 → 499
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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