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LOC106153591 epsilon-sarcoglycan-like [ Lingula anatina ]

Gene ID: 106153591, updated on 21-Dec-2023

Summary

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Gene symbol
LOC106153591
Gene description
epsilon-sarcoglycan-like
See related
EnsemblRapid:LOC106153591
Gene type
protein coding
RefSeq status
MODEL
Organism
Lingula anatina
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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Genomic context

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See LOC106153591 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775903.1 (97339..104190)
100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580936.1 (97339..104190)

NW_019775903.1Genomic Context describing neighboring genes Neighboring gene protein FAM53A Neighboring gene synaptobrevin homolog YKT6-like Neighboring gene sex peptide receptor Neighboring gene uncharacterized LOC106153597

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epsilon-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LinAna2.0 Primary Assembly

Genomic

  1. NW_019775903.1 Reference LinAna2.0 Primary Assembly

    Range
    97339..104190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013527568.1 → XP_013383022.1  epsilon-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A1S3HAG2
    Related
    XP_013383022.1, XM_013527568.1
    Conserved Domains (1) summary
    pfam05510
    Location:26 → 238
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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