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LOC106152584 transmembrane and TPR repeat-containing protein 1-like [ Lingula anatina ]

Gene ID: 106152584, updated on 21-Dec-2023

Summary

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Gene symbol
LOC106152584
Gene description
transmembrane and TPR repeat-containing protein 1-like
See related
EnsemblRapid:LOC106152584
Gene type
protein coding
RefSeq status
MODEL
Organism
Lingula anatina
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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Genomic context

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See LOC106152584 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019773848.1 (456031..471229)
100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580885.1 (456022..471229)

NW_019773848.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 2 Neighboring gene cGMP-inhibited 3',5'-cyclic phosphodiesterase A Neighboring gene ankyrin repeat domain-containing protein 49 Neighboring gene sex peptide receptor-like Neighboring gene probable G-protein coupled receptor B0563.6 Neighboring gene transmembrane and TPR repeat-containing protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LinAna2.0 Primary Assembly

Genomic

  1. NW_019773848.1 Reference LinAna2.0 Primary Assembly

    Range
    456031..471229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013526216.2 → XP_013381670.1  transmembrane and TPR repeat-containing protein 1-like

    UniProtKB/TrEMBL
    A0A1S3H6C7
    Related
    XP_013381670.1, XM_013526216.2
    Conserved Domains (9) summary
    COG0457
    Location:483 → 749
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:557 → 583
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:556 → 588
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:490 → 523
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:299 → 373
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:797 → 857
    TPR_11; TPR repeat
    pfam13424
    Location:721 → 786
    TPR_12; Tetratricopeptide repeat
    pfam13428
    Location:724 → 767
    TPR_14; Tetratricopeptide repeat
    pfam13431
    Location:611 → 644
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
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