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LINC00976 long intergenic non-protein coding RNA 976 [ Homo sapiens (human) ]

Gene ID: 106144608, updated on 10-Oct-2023

Summary

Official Symbol
LINC00976provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 976provided by HGNC
Primary source
HGNC:HGNC:50610
See related
Ensembl:ENSG00000229140 AllianceGenome:HGNC:50610
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LINC00976 in Genome Data Viewer
Location:
8q24.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (128952879..128966001, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (130078492..130091620, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (129965125..129978247, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 824 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:129566785-129567984 Neighboring gene NFE2L2 motif-containing MPRA enhancer 33 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:129624320-129625140 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:129757123-129757729 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:129780448-129781388 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:129799489-129800688 Neighboring gene uncharacterized LOC124902021 Neighboring gene NANOG hESC enhancer GRCh37_chr8:129873252-129873850 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:129908740-129909939 Neighboring gene MPRA-validated peak7171 silencer Neighboring gene VISTA enhancer hs1877 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:129995267-129996466 Neighboring gene uncharacterized LOC124902023 Neighboring gene uncharacterized LOC124902022 Neighboring gene long intergenic non-protein coding RNA 977

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145483.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015509
    Related
    ENST00000628064.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    128952879..128966001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    130078492..130091620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)