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LINC01173 long intergenic non-protein coding RNA 1173 [ Homo sapiens (human) ]

Gene ID: 106144537, updated on 26-Oct-2024

Summary

Official Symbol
LINC01173provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1173provided by HGNC
Primary source
HGNC:HGNC:49545
See related
AllianceGenome:HGNC:49545
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01173 in Genome Data Viewer
Location:
2q37.1-q37.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (234682668..234717764)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (235171706..235206811)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (235591312..235626408)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12473 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12474 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235405987-235406760 Neighboring gene CRISPRi-validated cis-regulatory element chr2.7113 Neighboring gene ARF like GTPase 4C Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:235471377-235472120 Neighboring gene uncharacterized LOC105373936 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:235505034-235505574 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:235505575-235506115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235512165-235513116 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:235531433-235532632 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:235549687-235550294 Neighboring gene NANOG hESC enhancer GRCh37_chr2:235570023-235570546 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235596500-235597125 Neighboring gene Sharpr-MPRA regulatory region 2610 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235602982-235604181 Neighboring gene NANOG hESC enhancer GRCh37_chr2:235619073-235619654 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235673486-235674685 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235680947-235681448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235681449-235681948 Neighboring gene uncharacterized LOC101927896 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235742667-235743866 Neighboring gene Sharpr-MPRA regulatory region 15004

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132376.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073425, AC104394

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    234682668..234717764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    235171706..235206811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)