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SWIP strumpellin and WASH-interacting protein [ Amyelois transitella ]

Gene ID: 106132398, updated on 23-May-2024

Summary

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Gene symbol
SWIP
Gene description
strumpellin and WASH-interacting protein
See related
EnsemblRapid:LOC106132398
Gene type
protein coding
RefSeq status
MODEL
Organism
Amyelois transitella
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Pyralidae; Phycitinae; Amyelois
Orthologs
fruit fly all
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Genomic context

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See SWIP in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_11 current ilAmyTran1.1 (GCF_032362555.1) 14 NC_083517.1 (7984596..7988951, complement)
100 previous assembly ASM118610v1 (GCF_001186105.1) Unplaced Scaffold NW_013535406.1 (3060860..3065286)

Chromosome 14 - NC_083517.1Genomic Context describing neighboring genes Neighboring gene syntaxin-5 Neighboring gene barrier to autointegration factor Neighboring gene pre-mRNA processing factor 40 Neighboring gene WD repeat-containing and planar cell polarity effector protein fritz Neighboring gene pyrokinin-1 receptor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4
Names
WASH complex subunit 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_032362555.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilAmyTran1.1 Primary Assembly

Genomic

  1. NC_083517.1 Reference ilAmyTran1.1 Primary Assembly

    Range
    7984596..7988951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013331798.2 → XP_013187252.1  WASH complex subunit 4

    Related
    XP_013187252.1
    Conserved Domains (3) summary
    pfam14744
    Location:572 → 903
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:18 → 553
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:924 → 1089
    WASH-7_C; WASH complex subunit 7, C-terminal
Nucleotide Protein
Heading Accession and Version

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