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LOC106125657 irregular chiasm C-roughest protein-like [ Papilio xuthus (Asian swallowtail) ]

Gene ID: 106125657, updated on 1-Aug-2024

Summary

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Gene symbol
LOC106125657
Gene description
irregular chiasm C-roughest protein-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Papilio xuthus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC106125657 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Pxut_1.0 (GCF_000836235.1) Unplaced Scaffold NW_013532866.1 (2276640..2313873, complement)

NW_013532866.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106125786 Neighboring gene irregular chiasm C-roughest protein-like Neighboring gene uncharacterized LOC106125685 Neighboring gene uncharacterized LOC106125732

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013532866.1 Unplaced Scaffold Reference Pxut_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive microarray-based analysis for stage-specific larval camouflage pattern-associated genes in the swallowtail butterfly, Papilio xuthus. Futahashi R, et al. BMC Biol, 2012 May 31. PMID 22651552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papilio xuthus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pxut_1.0

Genomic

  1. NW_013532866.1 Reference Pxut_1.0

    Range
    2276640..2313873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013322938.1 → XP_013178392.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A194QH44, A0AAJ7EI97
    Conserved Domains (4) summary
    smart00410
    Location:3 → 97
    IG_like; Immunoglobulin like
    pfam08205
    Location:104 → 194
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:296 → 363
    Ig_3; Immunoglobulin domain
    cl11960
    Location:380 → 476
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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