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shams glucoside xylosyltransferase 1 shams [ Stomoxys calcitrans (stable fly) ]

Gene ID: 106084244, updated on 22-May-2024

Summary

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Gene symbol
shams
Gene description
glucoside xylosyltransferase 1 shams
See related
EnsemblRapid:ENSXCRG00005010598
Gene type
protein coding
RefSeq status
MODEL
Organism
Stomoxys calcitrans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys
Orthologs
fruit fly all
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Genomic context

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See shams in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_08 current idStoCalc2.1 (GCF_963082655.1) 2 NC_081553.1 (159090591..159101030, complement)
100 previous assembly Stomoxys_calcitrans-1.0.1 (GCF_001015335.1) Unplaced Scaffold NW_013172088.1 (61914..72597)

Chromosome 2 - NC_081553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene uncharacterized LOC131994788 Neighboring gene uncharacterized LOC106084231 Neighboring gene uncharacterized LOC131995227 Neighboring gene C2 and C2B_Munc13-like domain-containing protein staccato

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963082655.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idStoCalc2.1

Genomic

  1. NC_081553.1 Reference idStoCalc2.1

    Range
    159090591..159101030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013247807.2 → XP_013103261.1  glucoside xylosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A1I8PBB1, A0A1I8PBE2
    Related
    ENSXCRP00005013663.1, ENSXCRT00005016407.1
    Conserved Domains (2) summary
    COG1442
    Location:60 → 284
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    cl11394
    Location:45 → 339
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_013247806.2 → XP_013103260.1  glucoside xylosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1I8PB76, A0A1I8PBB1
    Related
    ENSXCRP00005013657.1, ENSXCRT00005016398.1
    Conserved Domains (2) summary
    COG1442
    Location:65 → 289
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    cl11394
    Location:50 → 344
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_013247808.2 → XP_013103262.1  glucoside xylosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A1I8PB71, A0A1I8PBB1
    Conserved Domains (2) summary
    COG1442
    Location:43 → 267
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    cl11394
    Location:28 → 322
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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