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LOC106055625 beta-N-acetyl-D-glucosaminide beta-1,4-N-acetylglucosaminyl-transferase-like [ Biomphalaria glabrata ]

Gene ID: 106055625, updated on 26-Mar-2024

Summary

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Gene symbol
LOC106055625
Gene description
beta-N-acetyl-D-glucosaminide beta-1,4-N-acetylglucosaminyl-transferase-like
See related
VectorBase:BGLAX_033539; EnsemblRapid:ENSHHTG00000015769
Gene type
protein coding
RefSeq status
MODEL
Organism
Biomphalaria glabrata
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Panpulmonata; Hygrophila; Lymnaeoidea; Planorbidae; Biomphalaria
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Genomic context

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See LOC106055625 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_05 current xgBioGlab47.1 (GCF_947242115.1) 15 NC_074725.1 (11437216..11474173, complement)
100 previous assembly ASM45736v1 (GCF_000457365.1) Linkage Group LG29 Unlocalized Scaffold NW_013193945.1 (468529..478156)

Chromosome 15 - NC_074725.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 2-like Neighboring gene uncharacterized LOC129923172 Neighboring gene beta-1,4-N-acetylgalactosaminyltransferase bre-4-like Neighboring gene uncharacterized LOC129923166

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 5-like; beta-N-acetyl-D-glucosaminide beta-1,4-N-acetylglucosaminyl-transferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947242115.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xgBioGlab47.1

Genomic

  1. NC_074725.1 Reference xgBioGlab47.1

    Range
    11437216..11474173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056013016.1 → XP_055868991.1  beta-1,4-galactosyltransferase 5-like isoform X2

    UniProtKB/TrEMBL
    A0A9W2Z223

  2. XM_056013013.1 → XP_055868988.1  beta-N-acetyl-D-glucosaminide beta-1,4-N-acetylglucosaminyl-transferase-like isoform X1

    UniProtKB/TrEMBL
    A0A9W2Z1Q5
    Related
    ENSHHTP00000020238.1, ENSHHTT00000030374.1

  3. XM_056013015.1 → XP_055868990.1  beta-N-acetyl-D-glucosaminide beta-1,4-N-acetylglucosaminyl-transferase-like isoform X1

    UniProtKB/TrEMBL
    A0A9W2Z1Q5
    Related
    ENSHHTP00000020228.1, ENSHHTT00000030361.1

  4. XM_056013014.1 → XP_055868989.1  beta-N-acetyl-D-glucosaminide beta-1,4-N-acetylglucosaminyl-transferase-like isoform X1

    UniProtKB/TrEMBL
    A0A9W2Z1Q5
    Related
    ENSHHTP00000020217.1, ENSHHTT00000030346.1
Nucleotide Protein
Heading Accession and Version

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