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Slge Shh lung-gut enhancer [ Mus musculus (house mouse) ]

Gene ID: 106050036, updated on 9-Aug-2024

Summary

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Gene symbol
Slge
Gene description
Shh lung-gut enhancer
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This region contains a lung and gut enhancer of the sonic hedgehog (Shh) gene, located approximately 100 kb downstream. [provided by RefSeq, Jul 2015]
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Genomic context

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See Slge in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (28767647..28769446)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (28562649..28564448)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9530036O11Rik Neighboring gene sonic hedgehog brain enhancer region in intron 2 Neighboring gene sonic hedgehog Neighboring gene sonic hedgehog floor plate enhancer 1 Neighboring gene STARR-seq mESC enhancer starr_12722 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_12723 Neighboring gene STARR-seq mESC enhancer starr_12725 Neighboring gene predicted gene, 52839 Neighboring gene Shh brain enhancer 4 Neighboring gene predicted gene, 42243

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel regulatory element for Shh expression in the lung and gut of mouse embryos. Tsukiji N, et al. Mech Dev, 2014 Feb. PMID 24157522
  2. Long range regulation of the sonic hedgehog gene. Anderson E, et al. Curr Opin Genet Dev, 2014 Aug. PMID 24859115
  3. Mapping the Shh long-range regulatory domain. Anderson E, et al. Development, 2014 Oct. PMID 25252942, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042262.1 

    Range
    101..1900
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    28767647..28769446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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