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GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [ Anser cygnoides (Swan goose) ]

Gene ID: 106044126, updated on 5-Aug-2024

Summary

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Gene symbol
GBGT1
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
See related
EnsemblRapid:ENSACDG00000011810
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See GBGT1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 20 NC_089892.1 (4544521..4556025)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927668.1 (7746076..7758451, complement)

Chromosome 20 - NC_089892.1Genomic Context describing neighboring genes Neighboring gene surfeit 6 Neighboring gene coiled-coil domain containing 180 Neighboring gene uncharacterized LOC136786688 Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene general transcription factor 3C polypeptide 5 Neighboring gene bile salt-activated lipase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089892.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    4544521..4556025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066980691.1 → XP_066836792.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

  2. XM_013193996.3 → XP_013049450.2  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8B9ETL4

  3. XM_013193999.3 → XP_013049453.2  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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