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PLA2G4F phospholipase A2 group IVF [ Anser cygnoides (Swan goose) ]

Gene ID: 106042951, updated on 7-Aug-2024

Summary

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Gene symbol
PLA2G4F
Gene description
phospholipase A2 group IVF
See related
EnsemblRapid:ENSACDG00000001898
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See PLA2G4F in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 5 NC_089877.1 (32278552..32307371)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927692.1 (3778990..3807702, complement)

Chromosome 5 - NC_089877.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene VPS39 subunit of HOPS complex Neighboring gene cytosolic phospholipase A2 epsilon-like Neighboring gene cytosolic phospholipase A2 epsilon-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ruffle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic phospholipase A2 zeta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089877.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    32278552..32307371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013192185.3 → XP_013047639.1  cytosolic phospholipase A2 zeta isoform X1

    Related
    ENSACDP00000003119.1
    Conserved Domains (3) summary
    cd07201
    Location:342 → 884
    cPLA2_Grp-IVB-IVD-IVE-IVF; Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent
    cd04036
    Location:84 → 202
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    smart00022
    Location:350 → 830
    PLAc; Cytoplasmic phospholipase A2, catalytic subunit

  2. XM_048065183.2 → XP_047921140.1  cytosolic phospholipase A2 zeta isoform X2

Nucleotide Protein
Heading Accession and Version

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