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NPL N-acetylneuraminate pyruvate lyase [ Anser cygnoides (Swan goose) ]

Gene ID: 106042503, updated on 10-Oct-2024

Summary

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Gene symbol
NPL
Gene description
N-acetylneuraminate pyruvate lyase
See related
EnsemblRapid:ENSACDG00000009188
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See NPL in Genome Data Viewer
Location:
chromosome: 8
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 8 NC_089880.1 (13848548..13881638)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927730.1 (1737162..1770865)

Chromosome 8 - NC_089880.1Genomic Context describing neighboring genes Neighboring gene ring finger and CCCH-type domains 1 Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene small nucleolar RNA SNORD74 Neighboring gene small nucleolar RNA SNORD75 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene small nucleolar RNA snR60/Z15/Z230/Z193/J17 Neighboring gene small nucleolar RNA snR60/Z15/Z230/Z193/J17 Neighboring gene small nucleolar RNA SNORD44 Neighboring gene small nucleolar RNA SNORD78 Neighboring gene small nucleolar RNA SNORD79 Neighboring gene small nucleolar RNA SNORD47 Neighboring gene small nucleolar RNA SNORD81 Neighboring gene heme binding protein 2 Neighboring gene DExH-box helicase 9 Neighboring gene laminin subunit gamma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylneuraminate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089880.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    13848548..13881638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067001801.1 → XP_066857902.1  N-acetylneuraminate lyase isoform X4

  2. XM_067001802.1 → XP_066857903.1  N-acetylneuraminate lyase isoform X4

  3. XM_067001798.1 → XP_066857899.1  N-acetylneuraminate lyase isoform X4

  4. XM_067001800.1 → XP_066857901.1  N-acetylneuraminate lyase isoform X4

  5. XM_048073444.2 → XP_047929401.1  N-acetylneuraminate lyase isoform X4

  6. XM_048073448.2 → XP_047929405.1  N-acetylneuraminate lyase isoform X4

  7. XM_013191438.3 → XP_013046892.1  N-acetylneuraminate lyase isoform X5

    UniProtKB/TrEMBL
    A0A8B9DFM0
    Conserved Domains (1) summary
    cl21457
    Location:16 → 306
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

  8. XM_067001804.1 → XP_066857905.1  N-acetylneuraminate lyase isoform X7

  9. XM_048073440.2 → XP_047929397.2  N-acetylneuraminate lyase isoform X1

  10. XM_048073442.2 → XP_047929399.2  N-acetylneuraminate lyase isoform X3

  11. XM_067001803.1 → XP_066857904.1  N-acetylneuraminate lyase isoform X7

  12. XM_013191439.3 → XP_013046893.3  N-acetylneuraminate lyase isoform X6

  13. XM_067001797.1 → XP_066857898.1  N-acetylneuraminate lyase isoform X2

RNA

  1. XR_010833388.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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