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ACER3 alkaline ceramidase 3 [ Anser cygnoides (Swan goose) ]

Gene ID: 106042388, updated on 18-Sep-2024

Summary

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Gene symbol
ACER3
Gene description
alkaline ceramidase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See ACER3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 1 NC_089873.1 (209394216..209449007, complement)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927907.1 (196097..253254, complement)

Chromosome 1 - NC_089873.1Genomic Context describing neighboring genes Neighboring gene myosin VIIA Neighboring gene calpain 5 Neighboring gene olfactory marker protein Neighboring gene tsukushi, small leucine rich proteoglycan Neighboring gene uncharacterized LOC106042386 Neighboring gene guanylate cyclase 2F, retinal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089873.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    209394216..209449007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013191259.3 → XP_013046713.1  alkaline ceramidase 3 isoform X1

    See identical proteins and their annotated locations for XP_013046713.1

    Conserved Domains (1) summary
    pfam05875
    Location:12 → 263
    Ceramidase

  2. XM_066990004.1 → XP_066846105.1  alkaline ceramidase 3 isoform X2

  3. XM_066990005.1 → XP_066846106.1  alkaline ceramidase 3 isoform X3

RNA

  1. XR_007159101.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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