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GALNT17 polypeptide N-acetylgalactosaminyltransferase 17 [ Anser cygnoides (Swan goose) ]

Gene ID: 106041076, updated on 7-Aug-2024

Summary

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Gene symbol
GALNT17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
See related
EnsemblRapid:ENSACDG00000003883
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Also known as
WBSCR17
Orthologs
human mouse all
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Genomic context

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See GALNT17 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 18 NC_089890.1 (2452951..2663186, complement)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927704.1 (809645..1018391, complement)

Chromosome 18 - NC_089890.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125183255 Neighboring gene calneuron 1 Neighboring gene uncharacterized LOC106041044 Neighboring gene uncharacterized LOC136786590 Neighboring gene uncharacterized LOC136786299 Neighboring gene uncharacterized LOC106041100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 17
Names
Williams-Beuren syndrome chromosome region 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089890.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    2452951..2663186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048068094.2 → XP_047924051.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

  2. XM_013189317.3 → XP_013044771.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X2

    UniProtKB/TrEMBL
    A0A8B9ET28
    Related
    ENSACDP00000006497.1
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 591
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_066979434.1 → XP_066835535.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X4

  4. XM_013189318.3 → XP_013044772.2  polypeptide N-acetylgalactosaminyltransferase 17 isoform X3

  5. XM_013189319.3 → XP_013044773.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X5

    Conserved Domains (3) summary
    cd00161
    Location:149 → 275
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:147 → 273
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:3 → 136
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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