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SDC4 syndecan 4 [ Anser cygnoides (Swan goose) ]

Gene ID: 106040932, updated on 5-Aug-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
EnsemblRapid:ENSACDG00000000427
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 16 NC_089888.1 (14605339..14622752)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927817.1 (1899927..1918666)

Chromosome 16 - NC_089888.1Genomic Context describing neighboring genes Neighboring gene neuritin-like Neighboring gene SYS1 golgi trafficking protein Neighboring gene dynactin subunit 2-like Neighboring gene antigen-presenting glycoprotein CD1d-like Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089888.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    14605339..14622752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048046374.2 → XP_047902331.1  syndecan-4

    UniProtKB/TrEMBL
    A0A8B9E5M6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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