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GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 [ Anser cygnoides (Swan goose) ]

Gene ID: 106040914, updated on 10-Oct-2024

Summary

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Gene symbol
GALNT18
Gene description
polypeptide N-acetylgalactosaminyltransferase 18
See related
EnsemblRapid:ENSACDG00000002410
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See GALNT18 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 5 NC_089877.1 (1872115..2130667)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927712.1 (894382..1204756)

Chromosome 5 - NC_089877.1Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2 Neighboring gene dickkopf WNT signaling pathway inhibitor 3 Neighboring gene ubiquitin specific peptidase 47 Neighboring gene uncharacterized LOC125183493 Neighboring gene uncharacterized LOC106040923 Neighboring gene uncharacterized LOC136790956

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089877.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    1872115..2130667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048070109.2 → XP_047926066.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    Conserved Domains (2) summary
    cd02510
    Location:157 → 458
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 598
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_013189125.3 → XP_013044579.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    See identical proteins and their annotated locations for XP_013044579.1

    UniProtKB/TrEMBL
    A0A8B9DZ92
    Conserved Domains (2) summary
    cd02510
    Location:157 → 458
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 598
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  3. XM_048070117.2 → XP_047926074.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X2

Nucleotide Protein
Heading Accession and Version

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