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LOC106038647 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 [ Anser cygnoides (Swan goose) ]

Gene ID: 106038647, updated on 5-Aug-2024

Summary

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Gene symbol
LOC106038647
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
See related
EnsemblRapid:ENSACDG00000012142
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
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Genomic context

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See LOC106038647 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 4 NC_089876.1 (79654122..80145252)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927698.1 (6521810..6639123)

Chromosome 4 - NC_089876.1Genomic Context describing neighboring genes Neighboring gene N-deacetylase and N-sulfotransferase 4 Neighboring gene uncharacterized LOC106038630 Neighboring gene uncharacterized LOC106038623 Neighboring gene uncharacterized LOC106038650 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene protein transport protein Sec24D Neighboring gene serine protease 12 Neighboring gene glycerol-3-phosphate acyltransferase 3-like Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089876.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    79654122..80145252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066996479.1 → XP_066852580.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X2

  2. XM_066996478.1 → XP_066852579.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

RNA

  1. XR_010831310.1 RNA Sequence

  2. XR_010831312.1 RNA Sequence

  3. XR_010831311.1 RNA Sequence

  4. XR_010831309.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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