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CHST9 carbohydrate sulfotransferase 9 [ Anser cygnoides (Swan goose) ]

Gene ID: 106037609, updated on 5-Aug-2024

Summary

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Gene symbol
CHST9
Gene description
carbohydrate sulfotransferase 9
See related
EnsemblRapid:ENSACDG00000014750
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See CHST9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 2 NC_089874.1 (115583027..115686142, complement)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927785.1 (1067360..1169601)

Chromosome 2 - NC_089874.1Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene aquaporin 4 Neighboring gene uncharacterized LOC136790172 Neighboring gene uncharacterized LOC125184877 Neighboring gene cadherin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089874.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    115583027..115686142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066992892.1 → XP_066848993.1  carbohydrate sulfotransferase 9 isoform X1

  2. XM_048080042.2 → XP_047935999.2  carbohydrate sulfotransferase 9 isoform X1

  3. XM_048080041.2 → XP_047935998.2  carbohydrate sulfotransferase 9 isoform X1

  4. XM_048080040.2 → XP_047935997.2  carbohydrate sulfotransferase 9 isoform X1

  5. XM_066992891.1 → XP_066848992.1  carbohydrate sulfotransferase 9 isoform X2

  6. XM_066992890.1 → XP_066848991.1  carbohydrate sulfotransferase 9 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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