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XYLB xylulokinase [ Anser cygnoides (Swan goose) ]

Gene ID: 106036845, updated on 10-Oct-2024

Summary

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Gene symbol
XYLB
Gene description
xylulokinase
See related
EnsemblRapid:ENSACDG00000014083
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See XYLB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 2 NC_089874.1 (6974915..7068583, complement)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927684.1 (5024469..5121375, complement)

Chromosome 2 - NC_089874.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136790002 Neighboring gene uncharacterized LOC106036809 Neighboring gene uncharacterized LOC106036869 Neighboring gene chromosome 2 C9orf152 homolog Neighboring gene negative regulator of ubiquitin like proteins 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylulokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylulose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylulose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089874.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    6974915..7068583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048062335.2 → XP_047918292.2  xylulose kinase isoform X9

  2. XM_013182465.3 → XP_013037919.1  xylulose kinase isoform X4

    UniProtKB/TrEMBL
    A0A8B9ETA2, A0A8B9EWF4
    Related
    ENSACDP00000024677.1
    Conserved Domains (2) summary
    PLN02669
    Location:6 → 524
    PLN02669; xylulokinase
    cd07776
    Location:5 → 475
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  3. XM_048062328.2 → XP_047918285.1  xylulose kinase isoform X3

    UniProtKB/TrEMBL
    A0A8B9EYY4

  4. XM_048062330.2 → XP_047918287.1  xylulose kinase isoform X5

  5. XM_048062332.2 → XP_047918289.1  xylulose kinase isoform X7

  6. XM_048062326.2 → XP_047918283.1  xylulose kinase isoform X1

  7. XM_013182462.3 → XP_013037916.1  xylulose kinase isoform X2

    UniProtKB/TrEMBL
    A0A8B9ETA2
    Related
    ENSACDP00000024754.1
    Conserved Domains (2) summary
    PLN02669
    Location:34 → 542
    PLN02669; xylulokinase
    cd07776
    Location:34 → 493
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  8. XM_048062331.2 → XP_047918288.1  xylulose kinase isoform X6

  9. XM_048062334.2 → XP_047918291.1  xylulose kinase isoform X8

RNA

  1. XR_007162709.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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