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XYLT1 xylosyltransferase 1 [ Anser cygnoides (Swan goose) ]

Gene ID: 106033456, updated on 5-Aug-2024

Summary

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Gene symbol
XYLT1
Gene description
xylosyltransferase 1
See related
EnsemblRapid:ENSACDG00000008609
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See XYLT1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 15 NC_089887.1 (9228345..9420781, complement)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927663.1 (7563839..7751071)

Chromosome 15 - NC_089887.1Genomic Context describing neighboring genes Neighboring gene ARL6 interacting reticulophagy regulator 1 Neighboring gene ribosomal protein S15a Neighboring gene uncharacterized LOC106033457 Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene uncharacterized LOC125182739 Neighboring gene BOS complex subunit NOMO1 Neighboring gene ATP binding cassette subfamily C member 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089887.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    9228345..9420781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048061443.2 → XP_047917400.1  xylosyltransferase 1

    UniProtKB/TrEMBL
    A0A8B9IHG6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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