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MMP17 matrix metallopeptidase 17 [ Anser cygnoides (Swan goose) ]

Gene ID: 106031209, updated on 7-Aug-2024

Summary

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Gene symbol
MMP17
Gene description
matrix metallopeptidase 17
See related
EnsemblRapid:ENSACDG00000006559
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See MMP17 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 17 NC_089889.1 (6496674..6548005)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927689.1 (7356377..7393648, complement)

Chromosome 17 - NC_089889.1Genomic Context describing neighboring genes Neighboring gene splicing factor SWAP Neighboring gene uncharacterized LOC106031208 Neighboring gene uncharacterized LOC136786563 Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene pseudouridine synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089889.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    6496674..6548005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066979074.1 → XP_066835175.1  matrix metalloproteinase-17 isoform X1

  2. XM_066979075.1 → XP_066835176.1  matrix metalloproteinase-17 isoform X2

  3. XM_066979076.1 → XP_066835177.1  matrix metalloproteinase-17 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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