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COLEC11 collectin subfamily member 11 [ Anser cygnoides (Swan goose) ]

Gene ID: 106030693, updated on 5-Aug-2024

Summary

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Gene symbol
COLEC11
Gene description
collectin subfamily member 11
See related
EnsemblRapid:ENSACDG00000006966
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See COLEC11 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 3 NC_089875.1 (103645663..103980369)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927768.1 (1541206..1583168)

Chromosome 3 - NC_089875.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene peroxidasin Neighboring gene myelin transcription factor 1 like Neighboring gene uncharacterized LOC125184612 Neighboring gene uncharacterized LOC106030691 Neighboring gene EARP complex and GARP complex interacting protein 1 Neighboring gene trafficking protein particle complex subunit 12 Neighboring gene ribonuclease H1 Neighboring gene uncharacterized LOC106030830 Neighboring gene acireductone dioxygenase 1 Neighboring gene ribosomal protein S7 Neighboring gene uncharacterized LOC125184608 Neighboring gene uncharacterized LOC106030696

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collectin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089875.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    103645663..103980369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066994899.1 → XP_066851000.1  collectin-11 isoform X2

  2. XM_013172585.3 → XP_013028039.1  collectin-11 isoform X1

    See identical proteins and their annotated locations for XP_013028039.1

    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:41 → 97
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_013172590.3 → XP_013028044.1  collectin-11 isoform X3

    UniProtKB/TrEMBL
    A0A8B9ED24
    Related
    ENSACDP00000012063.1
    Conserved Domains (2) summary
    cd03591
    Location:151 → 266
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:41 → 97
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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