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HACD1 3-hydroxyacyl-CoA dehydratase 1 [ Anser cygnoides (Swan goose) ]

Gene ID: 106030350, updated on 7-Aug-2024

Summary

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Gene symbol
HACD1
Gene description
3-hydroxyacyl-CoA dehydratase 1
See related
EnsemblRapid:ENSACDG00000010052
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 2 NC_089874.1 (21982606..22000566)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927682.1 (6647796..6665895)

Chromosome 2 - NC_089874.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125182555 Neighboring gene signal transducing adaptor molecule Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene vimentin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089874.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    21982606..22000566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048061695.2 → XP_047917652.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X2

    Conserved Domains (1) summary
    pfam04387
    Location:76 → 233
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  2. XM_048061693.2 → XP_047917650.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8B9IM53
    Conserved Domains (1) summary
    pfam04387
    Location:76 → 235
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

RNA

  1. XR_007162539.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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