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Lrtm1 leucine rich repeats and transmembrane domains 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 106021741, updated on 13-Mar-2024

Summary

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Gene symbol
Lrtm1
Gene description
leucine rich repeats and transmembrane domains 1
See related
EnsemblRapid:ENSMAUG00000037522
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Lrtm1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429190.1 (102854150..102862237)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801678.1 (8930199..8934610)

NW_024429190.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106021748 Neighboring gene uncharacterized LOC106021747 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene uncharacterized LOC121140955 Neighboring gene uncharacterized LOC121140954

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429190.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    102854150..102862237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021231526.2 → XP_021087185.2  leucine-rich repeat and transmembrane domain-containing protein 1

    UniProtKB/TrEMBL
    A0A3Q0CYB5
    Related
    ENSMAUP00000050145.1, ENSMAUT00000066815.1
    Conserved Domains (1) summary
    cl15307
    Location:180 → 233
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

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