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Sgcg sarcoglycan gamma [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 106003199, updated on 13-Mar-2024

Summary

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Gene symbol
Sgcg
Gene description
sarcoglycan gamma
See related
Ensembl:ENSDORG00000005659
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Sgcg in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267217.1 (30559278..30591735)

NW_012267217.1Genomic Context describing neighboring genes Neighboring gene lysine--tRNA ligase pseudogene Neighboring gene transcription elongation factor B polypeptide 1 pseudogene Neighboring gene sacsin molecular chaperone Neighboring gene TNF receptor superfamily member 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267217.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267217.1 Reference Dord_2.0

    Range
    30559278..30591735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013038030.1 → XP_012893484.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A1S3GYZ1
    Related
    ENSDORP00000005295.2, ENSDORT00000005659.2
    Conserved Domains (1) summary
    pfam04790
    Location:50 → 274
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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