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Tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105998632, updated on 13-Mar-2024

Summary

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Gene symbol
Tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSDORG00000003472
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Tmtc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267383.1 (1533838..1674217)

NW_012267383.1Genomic Context describing neighboring genes Neighboring gene caprin family member 2 Neighboring gene importin 8 Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene ERGIC and golgi 2 Neighboring gene fatty acyl-CoA reductase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267383.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267383.1 Reference Dord_2.0

    Range
    1533838..1674217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013033416.1 → XP_012888870.1  transmembrane and TPR repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A1S3GJI6
    Related
    ENSDORP00000015908.1, ENSDORT00000028179.1
    Conserved Domains (8) summary
    COG0457
    Location:536 → 838
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:458 → 486
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:798 → 830
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:458 → 491
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:266 → 329
    DUF1736; Domain of unknown function (DUF1736)
    pfam09034
    Location:678 → 754
    TRADD_N; TRADD, N-terminal domain
    pfam13176
    Location:627 → 659
    TPR_7; Tetratricopeptide repeat
    pfam13414
    Location:457 → 520
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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