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B4galnt4 beta-1,4-N-acetyl-galactosaminyltransferase 4 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105998569, updated on 13-Mar-2024

Summary

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Gene symbol
B4galnt4
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 4
See related
Ensembl:ENSDORG00000003350
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See B4galnt4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267382.1 (286476..303141)

NW_012267382.1Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 1-like Neighboring gene protein-glucosylgalactosylhydroxylysine glucosidase Neighboring gene interferon induced transmembrane protein 5 Neighboring gene plakophilin 3 Neighboring gene single Ig and TIR domain containing Neighboring gene anoctamin 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267382.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267382.1 Reference Dord_2.0

    Range
    286476..303141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013033340.1 → XP_012888794.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A1S3GKM8
    Related
    ENSDORP00000003132.2, ENSDORT00000003350.2
    Conserved Domains (1) summary
    cl11394
    Location:556 → 707
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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