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Galnt17 polypeptide N-acetylgalactosaminyltransferase 17 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105998464, updated on 13-Mar-2024

Summary

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Gene symbol
Galnt17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Also known as
Wbscr17
Orthologs
human mouse all
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Genomic context

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See Galnt17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267380.1 (2191703..2359876)

NW_012267380.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105998454 Neighboring gene activator of transcription and developmental regulator AUTS2 Neighboring gene uncharacterized LOC105998482 Neighboring gene calneuron 1 Neighboring gene S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like Neighboring gene mitochondrial import inner membrane translocase subunit Tim23 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267380.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative polypeptide N-acetylgalactosaminyltransferase-like protein 3
Names
Williams-Beuren syndrome chromosome region 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267380.1 Reference Dord_2.0

    Range
    2191703..2359876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013033173.1 → XP_012888627.1  putative polypeptide N-acetylgalactosaminyltransferase-like protein 3

    UniProtKB/TrEMBL
    A0A1S3GKU9
    Conserved Domains (4) summary
    cd02510
    Location:561 → 860
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG1216
    Location:562 → 865
    GT2; Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]
    cd00161
    Location:873 → 999
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:871 → 997
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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