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Galnt5 polypeptide N-acetylgalactosaminyltransferase 5 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105995079, updated on 13-Mar-2024

Summary

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Gene symbol
Galnt5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
See related
Ensembl:ENSDORG00000003518
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267221.1 (9527246..9568548)

NW_012267221.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 43 pseudogene Neighboring gene glycerol-3-phosphate dehydrogenase 2 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2 pseudogene Neighboring gene ermin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267221.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267221.1 Reference Dord_2.0

    Range
    9527246..9568548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013028749.1 → XP_012884203.1  polypeptide N-acetylgalactosaminyltransferase 5

    UniProtKB/TrEMBL
    A0A1S3G5V8
    Related
    ENSDORP00000003292.2, ENSDORT00000003518.2
    Conserved Domains (4) summary
    cd02510
    Location:480 → 781
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:796 → 916
    RICIN; Ricin-type beta-trefoil
    COG0463
    Location:475 → 670
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:793 → 915
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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