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Ndst2 N-deacetylase and N-sulfotransferase 2 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105992670, updated on 13-Mar-2024

Summary

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Gene symbol
Ndst2
Gene description
N-deacetylase and N-sulfotransferase 2
See related
Ensembl:ENSDORG00000005556
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Ndst2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267302.1 (2538019..2548512, complement)

NW_012267302.1Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 1 Neighboring gene zinc finger SWIM-type containing 8 Neighboring gene calcium/calmodulin dependent protein kinase II gamma Neighboring gene plasminogen activator, urokinase Neighboring gene vinculin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267302.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267302.1 Reference Dord_2.0

    Range
    2538019..2548512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013025644.1 → XP_012881098.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012881098.1

    UniProtKB/TrEMBL
    A0A1S3FZ28
    Conserved Domains (2) summary
    pfam00685
    Location:658 → 907
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 569
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_013025645.1 → XP_012881099.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3FYI6
    Related
    ENSDORP00000005199.1, ENSDORT00000005557.2
    Conserved Domains (2) summary
    pfam00685
    Location:603 → 852
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 514
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_013025643.1 → XP_012881097.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012881097.1

    UniProtKB/TrEMBL
    A0A1S3FZ28
    Conserved Domains (2) summary
    pfam00685
    Location:658 → 907
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 569
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_013025648.1 → XP_012881102.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X5

    UniProtKB/TrEMBL
    A0A1S3FZ37
    Conserved Domains (2) summary
    pfam00685
    Location:126 → 375
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:1 → 37
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_013025647.1 → XP_012881101.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X4

    UniProtKB/TrEMBL
    A0A1S3FX11
    Conserved Domains (1) summary
    pfam12062
    Location:25 → 569
    HSNSD; heparan sulfate-N-deacetylase

  6. XM_013025646.1 → XP_012881100.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A1S3FXJ8
    Conserved Domains (2) summary
    pfam12062
    Location:25 → 569
    HSNSD; heparan sulfate-N-deacetylase
    cl21551
    Location:658 → 708
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
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