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Tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105990513, updated on 13-Mar-2024

Summary

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Gene symbol
Tmtc4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
See related
Ensembl:ENSDORG00000010833
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Tmtc4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267281.1 (5268574..5321929)

NW_012267281.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta like 1 Neighboring gene eukaryotic translation initiation factor 1 pseudogene Neighboring gene sodium leak channel, non-selective Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267281.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267281.1 Reference Dord_2.0

    Range
    5268574..5321929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013022958.1 → XP_012878412.1  transmembrane and TPR repeat-containing protein 4

    UniProtKB/TrEMBL
    A0A1S3FRC0
    Related
    ENSDORP00000010180.2, ENSDORT00000010833.2
    Conserved Domains (7) summary
    smart00028
    Location:564 → 597
    TPR; Tetratricopeptide repeats
    COG0457
    Location:461 → 719
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:462 → 490
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:530 → 563
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:272 → 346
    DUF1736; Domain of unknown function (DUF1736)
    pfam13181
    Location:462 → 494
    TPR_8; Tetratricopeptide repeat
    pfam13431
    Location:484 → 517
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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