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Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105989760, updated on 13-Mar-2024

Summary

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Gene symbol
Tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
Ensembl:ENSDORG00000016561
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Tmtc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267219.1 (23664322..23711410)

NW_012267219.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36a-like Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene centrosomal protein 290 Neighboring gene 28S ribosomal protein S16, mitochondrial pseudogene Neighboring gene KIT ligand

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267219.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267219.1 Reference Dord_2.0

    Range
    23664322..23711410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013021948.1 → XP_012877402.1  transmembrane and TPR repeat-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_012877402.1

    UniProtKB/TrEMBL
    A0A1S3FNF9
    Related
    ENSDORP00000023574.1, ENSDORT00000034834.1
    Conserved Domains (5) summary
    COG0457
    Location:459 → 757
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:597 → 630
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:739 → 802
    TPR_11; TPR repeat

  2. XM_013021956.1 → XP_012877410.1  transmembrane and TPR repeat-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_012877410.1

    UniProtKB/TrEMBL
    A0A1S3FNF9
    Related
    ENSDORP00000015579.2, ENSDORT00000016560.2
    Conserved Domains (5) summary
    COG0457
    Location:459 → 757
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:597 → 630
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:739 → 802
    TPR_11; TPR repeat

  3. XM_013021969.1 → XP_012877423.1  transmembrane and TPR repeat-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A1S3FLG6
    Conserved Domains (5) summary
    sd00006
    Location:441 → 468
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:508 → 541
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:169 → 242
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:475 → 539
    TPR_11; TPR repeat
    pfam13432
    Location:512 → 579
    TPR_16; Tetratricopeptide repeat

RNA

  1. XR_001175259.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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