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Pomt2 protein O-mannosyltransferase 2 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105986521, updated on 13-Mar-2024

Summary

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Gene symbol
Pomt2
Gene description
protein O-mannosyltransferase 2
See related
Ensembl:ENSDORG00000003506
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Pomt2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267218.1 (20887163..20929556)

NW_012267218.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C6orf106 homolog pseudogene Neighboring gene glutathione S-transferase zeta 1 Neighboring gene neuroglobin Neighboring gene transmembrane protein 63C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267218.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267218.1 Reference Dord_2.0

    Range
    20887163..20929556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013017483.1 → XP_012872937.1  protein O-mannosyl-transferase 2

    UniProtKB/TrEMBL
    A0A1S3FAN4
    Related
    ENSDORP00000017858.1, ENSDORT00000024483.1
    Conserved Domains (4) summary
    smart00472
    Location:400 → 455
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:39 → 722
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:58 → 302
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:544 → 720
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
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