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H3f3a H3 histone, family 3A [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105986506, updated on 13-Mar-2024

Summary

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Gene symbol
H3f3a
Gene description
H3 histone, family 3A
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See H3f3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267251.1 (146873..168304)

NW_012267251.1Genomic Context describing neighboring genes Neighboring gene pyrroline-5-carboxylate reductase 2-like Neighboring gene SDE2 telomere maintenance homolog Neighboring gene acyl-CoA binding domain containing 3 Neighboring gene lin-9 DREAM MuvB core complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267251.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H3.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267251.1 Reference Dord_2.0

    Range
    146873..168304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013017450.1 → XP_012872904.1  histone H3.3

    UniProtKB/TrEMBL
    A0A1S3FA28
    Conserved Domains (2) summary
    pfam00125
    Location:7 → 108
    Histone; Core histone H2A/H2B/H3/H4
    cl23735
    Location:19 → 112
    H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
Nucleotide Protein
Heading Accession and Version

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