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LOC105985238 torsin-1A-interacting protein 2-like [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105985238, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105985238
Gene description
torsin-1A-interacting protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
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Genomic context

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See LOC105985238 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267243.1 (5489174..5519789)

NW_012267243.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 350 Neighboring gene torsin 1A interacting protein 1 Neighboring gene torsin-1A-interacting protein 2, isoform IFRG15-like Neighboring gene family with sequence similarity 163 member A Neighboring gene tudor domain containing 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267243.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267243.1 Reference Dord_2.0

    Range
    5489174..5519789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013015681.1 → XP_012871135.1  torsin-1A-interacting protein 2-like isoform X2

    See identical proteins and their annotated locations for XP_012871135.1

    UniProtKB/TrEMBL
    A0A1S3F3C6
    Conserved Domains (2) summary
    pfam05609
    Location:8 → 474
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    pfam11081
    Location:4 → 87
    DUF2890; Protein of unknown function (DUF2890)

  2. XM_013015678.1 → XP_012871132.1  torsin-1A-interacting protein 2-like isoform X1

    See identical proteins and their annotated locations for XP_012871132.1

    UniProtKB/TrEMBL
    A0A1S3F3B8
    Conserved Domains (2) summary
    pfam05609
    Location:18 → 484
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    pfam11081
    Location:10 → 97
    DUF2890; Protein of unknown function (DUF2890)

  3. XM_013015680.1 → XP_012871134.1  torsin-1A-interacting protein 2-like isoform X2

    See identical proteins and their annotated locations for XP_012871134.1

    UniProtKB/TrEMBL
    A0A1S3F3C6
    Conserved Domains (2) summary
    pfam05609
    Location:8 → 474
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    pfam11081
    Location:4 → 87
    DUF2890; Protein of unknown function (DUF2890)

  4. XM_013015677.1 → XP_012871131.1  torsin-1A-interacting protein 2-like isoform X1

    See identical proteins and their annotated locations for XP_012871131.1

    UniProtKB/TrEMBL
    A0A1S3F3B8
    Conserved Domains (2) summary
    pfam05609
    Location:18 → 484
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    pfam11081
    Location:10 → 97
    DUF2890; Protein of unknown function (DUF2890)

  5. XM_013015679.1 → XP_012871133.1  torsin-1A-interacting protein 2-like isoform X2

    See identical proteins and their annotated locations for XP_012871133.1

    UniProtKB/TrEMBL
    A0A1S3F3C6
    Conserved Domains (2) summary
    pfam05609
    Location:8 → 474
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    pfam11081
    Location:4 → 87
    DUF2890; Protein of unknown function (DUF2890)
Nucleotide Protein
Heading Accession and Version

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