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Chpf chondroitin polymerizing factor [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105982562, updated on 13-Mar-2024

Summary

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Gene symbol
Chpf
Gene description
chondroitin polymerizing factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267217.1 (53246187..53252154, complement)

NW_012267217.1Genomic Context describing neighboring genes Neighboring gene GDP-mannose pyrophosphorylase A Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene transmembrane protein 198 Neighboring gene obscurin-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267217.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267217.1 Reference Dord_2.0

    Range
    53246187..53252154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013012218.1 → XP_012867672.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A1S3EW68
    Conserved Domains (2) summary
    pfam05679
    Location:262 → 761
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:194 → 283
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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